Replication Data for: Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
Data and Resources
Additional Info
| Field | Value |
|---|---|
| Author | Gardiner, Laura-Jayne, Brabbs, Thomas, Akhunov, Alina, Jordan, Katherine, Budak, Hikmet, Richmond, Todd, Singh, Sukhwinder, Catchpole, Leah, Akhunov, Eduard, Hall, Anthony |
| Maintainer | CIMMYT Research Data & Software Repository Network |
| Last Updated | January 20, 2025, 15:29 (UTC) |
| Created | January 20, 2025, 15:29 (UTC) |
| contributor | Rivera, Carolina |
| creator | Gardiner, Laura-Jayne |
| date | 2020-02-04T00:00:00 |
| harvest_object_id | fcc0b94b-130e-4720-8792-92596bb8c4e5 |
| harvest_source_id | a58b0729-e941-4389-816d-5823f01c0d28 |
| harvest_source_title | CIMMYT Research Data |
| identifier | https://hdl.handle.net/11529/10548200 |
| language | English |
| metadata_modified | 2024-10-26T07:00:03 |
| relation | The sequencing data sets are available in the European Nucleotide Archive repository, study accession number PRJEB27620 and sample accession numbers SAMEA4777554-577 <a href="https://www.ebi.ac.uk/ena/data/view/PRJEB27620" target="_blank">https://www.ebi.ac.uk/ena/data/view/PRJEB27620</a><br> </p> The final design space for the capture probes sets and the locations of the capture probes on this design space are available from the Grassroots Data Repository at <a href="https://opendata.earlham.ac.uk/wheat/under_license/toronto/Gardiner_2018-07-04_Wheat-gene-promoter-capture/" target="_blank">https://opendata.earlham.ac.uk/wheat/under_license/toronto/Gardiner_2018-07-04_Wheat-gene-promoter-capture/</a><br> </p> The target locations of the capture probe sets on the Chinese Spring IWGSC RefSeqv1, i.e., the high-confidence gene and putative promoter sequences, are detailed in supporting files. To download these files please go to 'Files' tab in this study.<br> </p> The NimbleGen order numbers for the probe sets are as follows: Gene Capture 4 000 026 820; Promoter Capture v1, 4 000 030 160; and Promoter Capture v2, 4 000 032 530. All data are also available from the GigaScience GigaDB repository at <a href="http://gigadb.org/dataset/100554" target="_blank">http://gigadb.org/dataset/100554</a> |
| set_spec | data_cimmyt |